Computer Applications in Molecular Genetics
MBG 8680

Please Note: This Web page will updated frequently

Course Information

• Course Description (PDF Format)
• Course Syllabus (PDF Format)
• Class List - 2006
• Text Book: Introduction to Bioinformatics, a Theoretical and Practical approach, Edited by S. A. Krawetz and D. D. Womble, Humana Press, 2003.
• Shiffman Computer Room 217 is at the west end of the second floor of the library.

Basic Information

• E-Mail
• Forwarding E-mail
• Transferring files between computers
• Software Sources

Shiffman Library/Electronic Library Resources

• Shiffman Library
• Bioinformatics Resources, via Shiffman Medical Library.

Some Useful Internet Sites

• Very Useful Internet Sites

Ellen Marks's Lecture Notes - 6/19/06

• Dr. Healy's Lecture Slides

Dr. Wildman's Internet Links - 6/22/06

• NCBI
• UCSC
• Ensembl
• gene ontology classifications
• PantherDB
• gene expression databases
• Lecture Slides 1
• Lecture Slides 2

Mike Kruger's Statistics Links - 6/26/06

• UCLA Link for learning SPSS Online
• Genetic Power Calculator
• nQuery Advisor Demo

Bin Yao's Demo Data - 6/27/06

• Lecture Slides
• sample.txt

Dr. Haddad's Materials - 6/28/06

• Lecture Slides
• BiobaseTutorial.pdf
• affyTutorial.pdf
• limma_users_guide.pdf
• long_R-refcard.pdf
• Lab7_End2End_Lab.pdf

Dr. Tromp's Perl Materials - 6/30/06

• PowerPoint Lecture Slides

Suggestions for Final Project

CMMG Online Computer Help Guides for GENETICS, UNIX, GCG, and WWW.

UNIX Tutorials

• UNIX Tutorial for Beginners
• Using X Windows
• HYBROW UNIX Menus and Browser

UNIX Help Guides

• Simple UNIX Commands
• Changing your Password
• Setting File Permissions
• Editing Text in UNIX
• File Transfer by FTP
• PINE E-mail Guide

GCG Tutorials

• Set Up Files for GCG Tutorials
• Introduction to GCG Programs
• Advanced GCG Functions
• Multiple Sequence Analysis
• Fragment Assembly System

GCG Help Guides

• GCG Programs at CMMG
• GCG Graphics and Printing
• GCG Pileup and List Files

SeqWeb - Web Interface for GCG

• SeqWeb at CMMG#
• SeqWeb Introduction#
• SeqWeb Help Pages#
• SeqWeb Tutorial

GCG Manuals

• GCG Online Manual*
• GCG Online Help - Alphabetical*
• GCG User's Guide*
• GCG Getting Started*
• GCG Manuals in PDF format*

MBG 8680 from 2005

• http://www.genetics.wayne.edu/Education/mbg8680.05/mbg8680.htm

Bioinformatics at CMMG and WSU

• http://www.bioinformatics.wayne.edu

Send comments to: dwomble@genetics.wayne.edu

Copyright © 2006, David D. Womble.