APPENDIX V

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References

The information in this appendix lists the citations used throughout the set of GCG documentation.

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Altschul, S.F. (1993). A protein alignment scoring system sensitive at all evolutionary distances. Journal of Molecular Evolution 36, 290-300.

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Altschul, Stephen F., Madden, Thomas L., Schaffer, Alejandro A., Zhang, Jinghui, Zhang, Zheng, Miller, Webb, and Lipman, David J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25(17), 3389-3402.

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Gribskov, M., Devereux, J., and Burgess, R.R. (1984). The Codon Preference Plot: Graphic Analysis of Protein Coding Sequences and Prediction of Gene Expression. Nucleic Acids Research 12, 539-549.

Gribskov, M., McLachlan, M., and Eisenberg, D. (1987). Profile Analysis: Detection of Distantly Related Proteins. Proceedings of the National Academy of Sciences USA 84, 4355-4358.

Gribskov, M., Homyak, M., Edenfield, J., and Eisenberg, D. (1988). Profile Scanning for Three-Dimensional Structural Patterns in Protein Sequences. Computer Applications in the Biosciences 4, 61-66.

Gribskov, M. and Eisenberg, D. (1989). Detection of Protein Structural Features With Profile Analysis. In Techniques in Protein Chemistry, (T.E. Hugli, ed.), Academic Press, San Diego, California, USA, 108-117.

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Higgins, D.G. and Sharp, P.M (1989). Fast and Sensitive Multiple Sequence Alignments on a Microcomputer. Computer Applications in the Biosciences 5, 151-153.

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Karlin, S. and Altschul, S.F. (1993). Applications and statistics for multiple high-scoring segments in molecular sequences. Proceedings of the National Academy of Sciences USA 90, 5873-5877.

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Li, Wen-Hsiung (1993). Unbiased Estimation of the Rates of Synonymous and Nonsynonymous Substitution. Journal of Molecular Evolution 36, 96-99.

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Printed: December 9, 1998 16:22 (1162)

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