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Enter Tags

This routine is used to add a set of tags (see section Annotation readings and contigs) stored in a file, to the database. The file format (see below) is identical to the output produced by the "save tags to file" option of "Find Repeats". See section Find Repeats. The format is a subset of the experiment file format. See section Experiment Files. The two are close enough for Enter tags to use an experiment file as input. The only input required is the name of the file to read and a file browser can be used to aid its selection.

Note that "Enter tags" will remove any results plotted in the contig comparator.

The start of a typical file is shown below.

CC   Repeat number 0, end 1
ID   zf48g3.s1
TC   REPT b 1031..1072
TC        Repeats with contig zf48g3.s1, offset 957
CC   Repeat number 0, end 2
ID   zf48g3.s1
TC   REPT b 957..998
TC        Repeats with contig zf48g3.s1, offset 1031
CC   
CC   Repeat number 1, end 1
ID   zf48g3.s1
TC   REPT b 1102..1130
TC        Repeats with contig zf48g3.s1, offset 953
CC   Repeat number 1, end 2
ID   zf48g3.s1
TC   REPT b 953..981
TC        Repeats with contig zf48g3.s1, offset 1102

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This page is maintained by James Bonfield. Last generated on 2 Febuary 1999.
URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/gap4_114.html