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Textual Outputs

The Results menu of the plot contains two options to list the restriction enzymes found in textual formats. The difference between the options is whether to sort the enzymes by type or position.

The output below shows the textual output from "Output enzyme by enzyme". The Fragment column gives the size of the fragments between each of the cut sites. The Lengths column contains the fragment sizes sorted on size.

Contig zf98g12.r1 (#801) 
Number of enzymes = 3
Number of matches = 7
  Matches found=     1 
      Name            Sequence                  Position Fragment lengths
    1 AATII           GACGT'C                       7130   7129    556 
                                                            556   7129 
  Matches found=     5 
      Name            Sequence                  Position Fragment lengths
    1 ACCI            GT'CGAC                        414    413    189 
    2 ACCI            GT'CTAC                       1296    882    413 
    3 ACCI            GT'CTAC                       3871   2575    882 
    4 ACCI            GT'CTAC                       5816   1945   1681 
    5 ACCI            GT'CGAC                       7497   1681   1945 
                                                            189   2575 
  Matches found=     1 
      Name            Sequence                  Position Fragment lengths
    1 AHAII           GA'CGTC                       7127   7126    559 
                                                            559   7126 

The output below shows the textual output from "Output ordered on position".

Contig zf98g12.r1 (#801) 
Number of enzymes = 3
Number of matches = 7
      Name            Sequence                  Position Fragment lengths
    1 ACCI            GT'CGAC                        414    413      3 
    2 ACCI            GT'CTAC                       1296    882    189 
    3 ACCI            GT'CTAC                       3871   2575    367 
    4 ACCI            GT'CTAC                       5816   1945    413 
    5 AHAII           GA'CGTC                       7127   1311    882 
    6 AATII           GACGT'C                       7130      3   1311 
    7 ACCI            GT'CGAC                       7497    367   1945 
                                                            189   2575 

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This page is maintained by James Bonfield. Last generated on 2 Febuary 1999.
URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/gap4_95.html