extract_seq -- extracts sequence from a trace or experiment file.
-output output_name] [
extract_seq extracts the sequence only information from a binary trace
file, an Experiment File, or from the old Staden format plain files. The input
can be read from either a file or standard input, and the output can be
written to either a file or standard output. The output contains the sequence
split onto lines of at most 60 characters each.
LTline types) trace file. Without this option, or when the trace file cannot be found, the sequence outputted is that listed in the Experiment File. This option has no effect for other input format types.
-good_onlyargument is specified this controls whether the cosmid sequence should be considered good data. Without this argument cosmid sequence is considered good.
extract_seqwill automatically determine the correct input file type. This option is supplied incase the automatic determination is incorrect (which is possible, but has never been observed).
See section ExperimentFile(4).See section scf(4).