This module searches for non "sequencing" vectors used in the shotgunning
process, eg for Cosmid or YAC. Any fragment in any orientation of this vector
could be present so there is no need for the cut sites to be known. The
vector_clip program is used for this task
(see section Screening against Vector Sequences).
- Option: Vector file name
The filename containing the vector sequence. At present this should be a file
containing a single plain text sequence containing just the bases or white
- Option: Max probability
This option specifies the maximum probability of a particular match occurring
by chance. Any match found with lower than this probability will be assumed to
be real match, hence lower values represent more stringent matching.
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Last generated on 2 Febuary 1999.