RepeatMaskerprogram. This is a program which searches for a comprehensive set of repeat sequences. Any matches which are found will be tagged with a comment indicating the type of repeat. These tags will then be visible from within Gap4. Full documentation is available from the author of RepeatMasker, or from typing
RepeatMasker -h. RepeatMasker is not included as part of the Staden Package. It is available from Arian Smit.
Smit, A. http://www.genome.washington.edu/UWGC/analysistools/repeatmask.htm.
COMMent tags in Gap4).