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General Index

- A B C D E F G I L M N O P R S T U V W

-

  • --
  • -config
  • -fofn
  • -no_win
  • -nowin
  • -win_compact
  • -win_separate
  • a

  • Adding modules
  • ALF/ABI to SCF conversion configuration
  • ALF/ABI to SCF conversion module
  • Arguments, command line
  • Augment Experiment files configuration
  • Augment Experiment files module
  • Augment, by line types
  • Augment, by text database
  • b

  • Batch mode
  • Blast screen configuration
  • Blast screen module
  • c

  • Cap2 assembly configuration
  • Cap2 assembly module
  • Cap3 assembly configuration
  • Cap3 assembly module
  • Cloning vector clip configuration
  • Cloning vector clip configuration (old style)
  • Cloning vector clip module
  • Cloning vector clip module (old style)
  • Colours
  • Command line arguments
  • Component configuration
  • Components
  • Compress Trace Files configuration
  • Compress Trace Files module
  • Configuration files
  • Configuration, manual
  • Configuring modules
  • Configuring pregap4
  • Cross_match configuration
  • Cross_match module
  • d

  • Database integration
  • Database, plain text format
  • e

  • Email configuration
  • Email module
  • Enter assembly configuration
  • Enter assembly module
  • Estimate base accuracies configuration
  • Estimate base accuracies module
  • Example code
  • Experiment File line types
  • f

  • FakII assembly configuration
  • FakII assembly module
  • FAQ
  • Files, specifying
  • Fonts
  • Frequently asked questions
  • Functions, builtin
  • Functions, in modules
  • g

  • Gap4 shotgun assembly configuration
  • Gap4 shotgun assembly module
  • General configuration configuration
  • General configuration module
  • Global variables
  • i

  • Information sources
  • Initialise Experiment files configuration
  • Initialise Experiment files module
  • Interactive clipping configuration
  • Interactive clipping module
  • Introduction
  • l

  • Line types, in experiment file
  • m

  • Manual configuration
  • Module functions
  • Module variables
  • Module, example code
  • Modules, adding and removing
  • Modules, configuring
  • Modules, creating
  • Modules, overview
  • Mutation detection configuration
  • Mutation detection module
  • n

  • Naming schemes
  • Naming schemes, creating.
  • Non-interactive processing
  • o

  • Old cloning vector clip configuration
  • p

  • Phrap assembly configuration
  • Phrap assembly module
  • Phred configuration
  • Phred module
  • r

  • Removing modules
  • RepeatMasker configuration
  • RepeatMasker module
  • Run command
  • s

  • Sanger Centre naming scheme, new
  • Sanger Centre naming scheme, old
  • Screen for unclipped vector configuration
  • Screen for unclipped vector module
  • Screen sequences configuration
  • Screen sequences module
  • Sequencing vector clip configuration
  • Sequencing vector clip module
  • Shutdown configuration
  • Simple Text Database
  • Styles of windows
  • t

  • Tag repeats configuration
  • Tag repeats module
  • Trace quality clip configuration
  • Trace quality clip module
  • u

  • Uncalled base clip configuration
  • Uncalled base clip module
  • v

  • Variables, global to all modules
  • Variables, in modules
  • w

  • Window styles

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    This page is maintained by James Bonfield. Last generated on 2 Febuary 1999.
    URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/pregap4_77.html