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Index

. A C D E F I M N O P Q R S T V

.

  • .pregaprc file
  • a

  • abi_Ent_com: pregap variable
  • abi_Exp_com: pregap variable
  • abi_filenames
  • abi_samplenames
  • abi_SCF_com: pregap variable
  • alf_Ent_com: pregap variable
  • alf_Exp_com: pregap variable
  • alf_SCF_com: pregap variable
  • AP: pregap variable
  • AP_com: pregap variable
  • c

  • CF: pregap variable
  • CF_com: pregap variable
  • CF_def: pregap variable
  • CH: pregap_variable
  • CH_com: pregap_variable
  • Clip: pregap, use within
  • clip_args: pregap
  • clipping: pregap
  • CN: pregap variable
  • CN_com: pregap variable
  • CV: pregap variable
  • CV_com: pregap variable
  • d

  • do_qual_clip: pregap variable
  • do_qual_clip_def: pregap variable
  • DR: pregap variable
  • DR_com: pregap variable
  • DT: pregap variable
  • DT_com: pregap example
  • DT_com: pregap variable
  • e

  • Eba: pregap, use within
  • EX: pregap variable
  • EX_com: pregap variable
  • f

  • file_type: pregap variable
  • file_type_def: pregap variable
  • fofn: pregap variable
  • fofn_def: pregap variable
  • i

  • Init_exp: pregap, use within
  • m

  • MakeSCF: pregap, use within
  • MC: pregap variable
  • MC_com: pregap variable
  • MN: pregap variable
  • MN_com: pregap variable
  • MT_com: pregap example
  • n

  • Naming conventions
  • o

  • OP: pregap variable
  • OP_com: pregap example
  • OP_com: pregap variable
  • p

  • pln_Ent_com: pregap variable
  • pln_Exp_com: pregap variable
  • PN: pregap variable
  • PN_com: pregap variable
  • PR: pregap variable
  • PR_com: pregap variable
  • Pregap: automation
  • Pregap: clip
  • Pregap: clip_args
  • Pregap: configuration
  • Pregap: eba
  • Pregap: Example integration - full database
  • Pregap: Example integration - simple database
  • Pregap: Example integration - squirrel database
  • Pregap: init_exp
  • Pregap: integration
  • Pregap: interaction
  • Pregap: introduction
  • Pregap: makeSCF
  • Pregap: naming conventions
  • Pregap: notes
  • Pregap: processes
  • Pregap: quality clipping
  • Pregap: questions
  • Pregap: repe
  • Pregap: squirrel database
  • Pregap: summary
  • Pregap: trev
  • Pregap: trev_args
  • pregap: variable list
  • Pregap: vector_clip
  • pregaprc file
  • q

  • QL_def: pregap variable
  • QR_def: pregap variable
  • qual_clip_interactive: pregap variable
  • qual_clip_interactive_def: pregap variable
  • quality clipping: pregap
  • r

  • Repe: pregap, use within
  • repe_repeat_file: pregap variable
  • repe_tag_type: pregap variable
  • s

  • SC: pregap variable
  • SC_com: pregap variable
  • SC_def: pregap variable
  • scf_Exp_com: pregap variable
  • screen_av: pregap variable
  • screen_av_def: pregap variable
  • screen_cv: pregap variable
  • screen_cv_def: pregap variable
  • screen_sv: pregap variable
  • screen_sv_def: pregap variable
  • SF: pregap variable
  • SF_com: pregap variable
  • SF_def: pregap variable
  • SI: pregap variable
  • SI_com: pregap variable
  • SP: pregap variable
  • SP_com: pregap variable
  • SP_def: pregap variable
  • Squirrel: using with pregap
  • SS: pregap variable
  • SS_com: pregap variable
  • ST: pregap variable
  • ST_com: pregap variable
  • SV: pregap variable
  • SV_com: pregap variable
  • system-pregaprc file
  • t

  • tag_alu: pregap variable
  • tag_alu_def: pregap variable
  • TN: pregap variable
  • TN_com: pregap variable
  • Trev: pregap, use within
  • trev_args: pregap
  • v

  • Vector_clip: pregap, use within
  • vepe_avec_min_match: pregap variable
  • vepe_cvec_diagonals: pregap variable
  • vepe_cvec_score: pregap variable
  • vepe_cvec_word_length: pregap variable
  • vepe_svec_diagonals: pregap variable
  • vepe_svec_min_length: pregap variable
  • vepe_svec_score: pregap variable
  • vepe_svec_word_length: pregap variable

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    This page is maintained by James Bonfield. Last generated on 2 Febuary 1999.
    URL: http://www.mrc-lmb.cam.ac.uk/pubseq/manual/pregap_15.html